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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6321199_6332453_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6321199 - 6332453
Intron Length:
11255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATGCTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTGTATTTAAAT
Flanking Amino Acid:
KDLRLKDYSSGYDYGYVCVE
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
80.6
33.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.7
0.4
1
58.2
42.5
Minor 5ss
31.6
-2.1
3
39.4
46.1
Minor BPS
59.7
0.38
1.7
73.84
43

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037795
6295320 - 6337817
42498
ENSAPLT00000033819
6292487 - 6337817
45331
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435