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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6335742_6337446_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6335742 - 6337446
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATTT
Flanking Amino Acid:
HRQGNRTGSYRGSQEERFAP
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.7
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.4
0.89
0.7
84.4
30.5
Minor 5ss
42.5
-0.8
2.9
60.1
44
Minor BPS
62.5
0.47
1.6
74.92
43

Associated Gene:

Gene:
RBM6
Ensembl Gene ID:
ENSAPLG00000003536
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033819
6292487 - 6337817
45331
ENSAPLT00000029019
6288383 - 6337817
49435
ENSAPLT00000003686
6288383 - 6337817
49435
ENSAPLT00000046469
6288383 - 6337817
49435
ENSAPLT00000037795
6295320 - 6337817
42498