Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6347028_6348112_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6347028 - 6348112

Intron Length:

1085

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTGAGTCCT

5'SS Class:

major

3'SS Sequence:

TGCTCGGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTCGAG

U12 Branch Point Sequence:

CTGGCTTCGAGG

Flanking Amino Acid:

FQPQEYCPHSVNLSALVNDT

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.6

0.34

1.3

62.3

43.9

Major BPS

-0.3

1.7

47.5

Major PPT

68.9

0.43

61.4

40.1

Minor 5ss

32.4

-2

2.9

38.2

39.5

Minor BPS

41.4

-0.8

1.9

41.49

44.1

Associated Gene:

Gene:

MST1R

Ensembl Gene ID:

ENSAPLG00000025617

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018453

6345736 - 6353898

8163