About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6348506_6348584_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6348506 - 6348584
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCGGTGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCCTGCTCACCT
Flanking Amino Acid:
DSLLFAAGTKVWRVNVTGPG
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
67
0.38
1
57.5
43.2
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
47
-0.1
2.2
67.41
49.1

Associated Gene:

Gene:
MST1R
Ensembl Gene ID:
ENSAPLG00000025617
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018453
6345736 - 6353898
8163