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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6349105_6349176_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6349105 - 6349176
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TGCCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
CGCCGCTGATCC
Flanking Amino Acid:
CSVLLNESWARPQPASRLKD
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
65.5
0.35
0.9
57.9
33.2
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
40.7
-0.7
2
45.17
43

Associated Gene:

Gene:
MST1R
Ensembl Gene ID:
ENSAPLG00000025617
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018453
6345736 - 6353898
8163