Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6349352_6349463_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6349352 - 6349463

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAATGTCC

5'SS Class:

major

3'SS Sequence:

TGTCTCTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTTCAC

U12 Branch Point Sequence:

TGTCTCTGCCCA

Flanking Amino Acid:

SATLGGFFFVEPQVSSLHPS

Intron Amino Acid Position:

681

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

62.1

37.2

Major BPS

57.1

0.18

1.3

63.1

44.5

Major PPT

72.6

0.51

65.2

41.1

Minor 5ss

38.2

-1.3

3.2

48.2

Minor BPS

36.1

-1

3.5

41.3

Associated Gene:

Gene:

MST1R

Ensembl Gene ID:

ENSAPLG00000025617

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018453

6345736 - 6353898

8163