About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6349884_6350146_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6349884 - 6350146
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CCGCCCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTGCTCTGACCC
Flanking Amino Acid:
VWGIVPNCSYEGLMLTLIGS
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
66
40.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
61.6
0.26
0.9
53.6
29.5
Minor 5ss
32.1
-2
3.3
36.6
41.6
Minor BPS
47.6
-0.2
1.7
57.12
41.2

Associated Gene:

Gene:
MST1R
Ensembl Gene ID:
ENSAPLG00000025617
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018453
6345736 - 6353898
8163