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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6352093_6352193_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6352093 - 6352193
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CCCTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
CTGTCCCCAACC
Flanking Amino Acid:
VHRDLAARNCMLDETLTVKV
Intron Amino Acid Position:
1219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
79
0.65
0.7
72.8
25.4
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
54
0.1
2
67.41
43.9

Associated Gene:

Gene:
MST1R
Ensembl Gene ID:
ENSAPLG00000025617
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018453
6345736 - 6353898
8163