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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6374753_6375358_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6374753 - 6375358
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTCGTAATT
Flanking Amino Acid:
RLRNKLKTMERIELLLQSQR
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
63.3
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91.8
0.94
0.7
89.1
26.6
Minor 5ss
33.3
-1.9
3.1
42.6
44.5
Minor BPS
64.5
0.53
2
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004100
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004253
6369942 - 6381279
11338