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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6378004_6378233_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6378004 - 6378233
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTTCCCTTAGCT
Flanking Amino Acid:
DLKNADKEILSLKKKIDILQ
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
78.6
29.9
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
78.4
0.64
0.7
69.4
31.4
Minor 5ss
31.8
-2.1
3
37.3
41.2
Minor BPS
71.5
0.75
1.6
85.67
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004100
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004253
6369942 - 6381279
11338