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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6378323_6378838_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6378323 - 6378838
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCGAA
5'SS Class:
major
3'SS Sequence:
CGTGGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GCCTCCTGATGG
Flanking Amino Acid:
RETLSRLVFESPAPVELRHP
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.5
38.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
70.4
0.46
1
61.7
40
Minor 5ss
31.1
-2.2
3.2
38.1
46.8
Minor BPS
43.6
-0.6
2
44.48
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004100
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004253
6369942 - 6381279
11338