Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6379906_6380412_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6379906 - 6380412

Intron Length:

507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTTAT

U12 Branch Point Sequence:

TCACGTTTATTT

Flanking Amino Acid:

LLGSHKNTGTVRMGYDGLGG

Intron Amino Acid Position:

324

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

0.9

71.8

39.7

Major BPS

0.47

1.2

61.1

45.5

Major PPT

79.6

0.67

0.7

73.3

31.7

Minor 5ss

31.1

-2.2

2.6

35.7

40.4

Minor BPS

46.2

-0.2

1.9

61.48

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004100

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004253

6369942 - 6381279

11338