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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6413676_6433766_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6413676 - 6433766
Intron Length:
20091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCGTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
CGGTGGCTAACG
Flanking Amino Acid:
GFNPTPHLVEKNEWLCLNCQ
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
72.7
0.51
0.9
65.1
36.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
38.7
-0.9
2.5
44.2
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029769
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035433
6412908 - 6438177
25270