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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6434288_6438104_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6434288 - 6438104
Intron Length:
3817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGCCA
5'SS Class:
major
3'SS Sequence:
CGGGTACGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGATGAT
U12 Branch Point Sequence:
GATTCCACACGG
Flanking Amino Acid:
LVPHSGALGKWSRSSRWVHT
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.1
39.1
Major BPS
60.7
0.27
1.2
51.5
43.9
Major PPT
49.2
-0
1.2
39.3
43.9
Minor 5ss
25.7
-2.8
3
27.7
37.3
Minor BPS
40
-0.9
2.2
46.78
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029769
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035433
6412908 - 6438177
25270