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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_64662_65297_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64662 - 65297
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTCTTAAATT
Flanking Amino Acid:
ELSKQKQIEKDLEEQSRLIA
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
67.5
0.4
1
68.2
36.4
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
69.1
0.68
1.6
82.98
39.3

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053