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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6482124_6491765_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6482124 - 6491765
Intron Length:
9642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTTTCTTTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
79.3
0.66
0.9
74.7
39
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
84.6
1.06
1
85.93
32.4

Associated Gene:

Gene:
DAG1
Ensembl Gene ID:
ENSAPLG00000023906
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031944
6482063 - 6504570
22508