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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6492176_6501161_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6492176 - 6501161
Intron Length:
8986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TACTGCTAAAAA
Flanking Amino Acid:
LIASNGEVVQISEAGKESLP
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
78
0.63
0.9
76.7
31.9
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
47.9
-0.1
2.2
61.46
44.5

Associated Gene:

Gene:
DAG1
Ensembl Gene ID:
ENSAPLG00000023906
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037001
6474417 - 6504570
30154
ENSAPLT00000036826
6486727 - 6504570
17844
ENSAPLT00000031944
6482063 - 6504570
22508
ENSAPLT00000020175
6482063 - 6504570
22508
ENSAPLT00000042825
6467630 - 6504570
36941