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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6554307_6558678_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6554307 - 6558678
Intron Length:
4372

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCCCACAGG
5'SS Class:
weak_major
3'SS Sequence:
TTCTTTCTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TCCCCTGAAAAA
Flanking Amino Acid:
ARSASHSTKTGVVSVCFEGD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.01
1.2
43.2
43.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
82.5
0.73
0.9
80.6
31.5
Minor 5ss
22.3
-3.2
3.7
28.4
38
Minor BPS
40.4
-0.7
2.2
48.99
42.2

Associated Gene:

Gene:
IP6K1
Ensembl Gene ID:
ENSAPLG00000008308
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008635
6554192 - 6562348
8157