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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6558890_6559353_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6558890 - 6559353
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTATACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CTGTCTTTATAC
Flanking Amino Acid:
KPGLASDSTESNIQETKSPR
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.8
0.54
1
67.1
42.6
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
54
0.11
1.7
62.93
43

Associated Gene:

Gene:
IP6K1
Ensembl Gene ID:
ENSAPLG00000008308
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008635
6554192 - 6562348
8157