Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6567027_6567388_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6567027 - 6567388

Intron Length:

362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTGAGTGTG

5'SS Class:

major

3'SS Sequence:

TTTGGCCCTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

TTGGCCCTACAG

Flanking Amino Acid:

AEKRHFSLNTYTEYISTEEL

Intron Amino Acid Position:

1120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.1

65.2

40.8

Major BPS

48.9

-0

1.3

39.1

Major PPT

77.5

0.62

0.9

69.7

36.8

Minor 5ss

32.8

-2

3.3

40.9

45.3

Minor BPS

44.2

-0.5

2.1

53.03

47.3

Associated Gene:

Gene:

RNF123

Ensembl Gene ID:

ENSAPLG00000007425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007811

6566506 - 6610001

43496

ENSAPLT00000041169

6566506 - 6610001

43496