Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6579432_6579594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6579432 - 6579594

Intron Length:

163

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCTCGGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGGGAA

U12 Branch Point Sequence:

CCTTGGTGAGCT

Flanking Amino Acid:

FSEFIGMIQEIQQAAERLER

Intron Amino Acid Position:

956

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

0.9

72.2

39.5

Major BPS

48.8

-0

1.5

49.1

46.3

Major PPT

69.1

0.43

66.1

35.9

Minor 5ss

34.5

-1.8

3.4

45.9

49.3

Minor BPS

-0.6

2.5

60.09

49.1

Associated Gene:

Gene:

RNF123

Ensembl Gene ID:

ENSAPLG00000007425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041169

6566506 - 6610001

43496

ENSAPLT00000007811

6566506 - 6610001

43496