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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6586666_6589014_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6586666 - 6589014
Intron Length:
2349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
CATTCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTGTCCTAACCC
Flanking Amino Acid:
HFADSRIVGTDIRDSLMQAL
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
74.7
0.56
0.8
65.8
35.6
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
53
0.07
2
65.47
46.4

Associated Gene:

Gene:
RNF123
Ensembl Gene ID:
ENSAPLG00000007425
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041169
6566506 - 6610001
43496
ENSAPLT00000007811
6566506 - 6610001
43496