Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6600456_6600938_R

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

6600456 - 6600938

Intron Length:

483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

AACGTTGCCGCAG|C

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

CTTGCTTTAACG

Flanking Amino Acid:

KSRKYLLSNVLFDVLRSVVF

Intron Amino Acid Position:

333

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

49.8

-0

1.3

55.7

43.9

Major BPS

77.3

0.68

79.3

29.4

Major PPT

61.7

0.26

54.2

40.5

Minor 5ss

100

1.68

0.4

100

Minor BPS

70.2

0.5

1.5

70.57

43.2

Associated Gene:

Gene:

RNF123

Ensembl Gene ID:

ENSAPLG00000007425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041169

6566506 - 6610001

43496

ENSAPLT00000007811

6566506 - 6610001

43496