About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6601302_6601944_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6601302 - 6601944
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
LLDLMWLLMEEYEVHECLKQ
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.3
0.79
0.7
84
30.8
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
RNF123
Ensembl Gene ID:
ENSAPLG00000007425
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041169
6566506 - 6610001
43496
ENSAPLT00000007811
6566506 - 6610001
43496