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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6602307_6607755_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6602307 - 6607755
Intron Length:
5449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAT
U12 Branch Point Sequence:
TAGCTCCAAGCT
Flanking Amino Acid:
WNVTTTNYGKEGKLVEKDTS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
59.9
0.25
1.5
71.4
45.1
Major PPT
77.6
0.62
0.9
70.5
39.9
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
41.7
-0.5
2
58.99
43.9

Associated Gene:

Gene:
RNF123
Ensembl Gene ID:
ENSAPLG00000007425
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041169
6566506 - 6610001
43496