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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6642857_6647091_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6642857 - 6647091
Intron Length:
4235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CAAACATGAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTCTTCAAAA
Flanking Amino Acid:
SQRQEGSYIQDKVILRISLQ
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
50.6
0.01
1.1
44.3
40.7
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
64.2
0.44
1.6
74.44
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024855
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037209
6642794 - 6654331
11538