About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6647200_6648397_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6647200 - 6648397
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TTCTCTCTTACA
Flanking Amino Acid:
LLMRYATFVKTILDSTQKLN
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.3
29.4
Major BPS
67.6
0.44
1.2
75
40
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
38.2
-1.3
3
51
45.5
Minor BPS
55
0.15
2
71.9
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024855
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037209
6642794 - 6654331
11538