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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6648530_6649852_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6648530 - 6649852
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
GGTGTTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGATATTTCATT
Flanking Amino Acid:
FAVFDSYCQQEVVSALVTHV
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.9
0.52
0.9
69.5
41.6
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
49.7
0.06
1.9
70.32
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024855
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037209
6642794 - 6654331
11538