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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6649988_6651097_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6649988 - 6651097
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGCTCTCTAACA
Flanking Amino Acid:
MQNAFQDHSMVIRDFFPSIL
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
71.5
38.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
30.9
-2.2
3.1
39.4
40
Minor BPS
63.7
0.43
1.7
72.69
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024855
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037209
6642794 - 6654331
11538