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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6651613_6652364_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6651613 - 6652364
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTACTTTAATG
Flanking Amino Acid:
QKDVSEAWIKAIENTTSVSD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.9
0.58
0.9
73.8
36.9
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
69.1
0.46
1.4
68.78
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024855
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037209
6642794 - 6654331
11538