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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6669207_6669374_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6669207 - 6669374
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGATTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCTTCTGATTT
Flanking Amino Acid:
GIELLTLDASWVSSASWYFL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
68.8
42.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79
0.65
0.9
76.4
37.3
Minor 5ss
40.1
-1.1
3.4
52.3
45.8
Minor BPS
51.2
0.12
1.7
68.88
42.5

Associated Gene:

Gene:
EMC3
Ensembl Gene ID:
ENSAPLG00000001148
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001273
6667056 - 6670617
3562