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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6670128_6670488_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6670128 - 6670488
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAT
5'SS Class:
strong_major
3'SS Sequence:
AATGTCAATGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTCTCTACCT
Flanking Amino Acid:
MPADTNKAFKTEWEALELTD
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
75.8
36.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
52.9
0.07
1.2
51.4
41.3
Minor 5ss
37.3
-1.4
3.6
55.1
49.1
Minor BPS
57.3
0.31
2
80.09
42.2

Associated Gene:

Gene:
EMC3
Ensembl Gene ID:
ENSAPLG00000001148
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001273
6667056 - 6670617
3562