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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6684059_6695743_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6684059 - 6695743
Intron Length:
11685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
GTCTTTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TGTCTTTCAAAC
Flanking Amino Acid:
NHIMPKDDIFVYEVCKPSED
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
70.3
0.46
1
66.4
38.7
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
49.8
-0
1.6
61.96
36.9

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496