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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6696632_6699032_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6696632 - 6699032
Intron Length:
2401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
ATGATGTTATCT
Flanking Amino Acid:
YADPQRRPVQYRVVVPMMGA
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
83.8
0.76
0.8
76.9
37.3
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
46.1
-0.2
2.2
66.33
44.5

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496