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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6703649_6704407_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6703649 - 6704407
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
AATATTTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTCCTTAATA
Flanking Amino Acid:
NTCFMNSALQCLSNTPPLTD
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78.1
0.63
0.9
74.5
40.3
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
88.8
1.21
0.8
89.95
24.9

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496