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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6704526_6705148_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6704526 - 6705148
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GACCGGGTAACT
Flanking Amino Acid:
YGLNSSHLGRGGSGFVCNSY
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
37.5
-0.8
2.7
54.93
46.5

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496