About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6705293_6712150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6705293 - 6712150
Intron Length:
6858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAGCAC
U12 Branch Point Sequence:
TTTTCCTTTCTC
Flanking Amino Acid:
DTWPRQHLLAKSSTATSRNF
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
44.3
-0.3
1.5
51.4
43.9
Major PPT
83.2
0.75
0.7
76.2
32.4
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
47.3
-0.2
3.6
78.41
37.7

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496