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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6712618_6713720_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6712618 - 6713720
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTCCTGAACA
Flanking Amino Acid:
SCHFSKADTVATIEKEMRKL
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
72.8
0.51
1
69.3
35.6
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
79.3
0.92
1.3
84.45
35.5

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496