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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6717777_6717903_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6717777 - 6717903
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCGTGCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
GCGCCGCTGAGG
Flanking Amino Acid:
LATALRPGEAWYLVDISWFK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
68.5
0.42
1
60.7
40.2
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
34.4
-1.3
2.3
33.12
40.6

Associated Gene:

Gene:
USP4
Ensembl Gene ID:
ENSAPLG00000014796
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015545
6676557 - 6718052
41496