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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6727830_6728818_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6727830 - 6728818
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACCAATT
Flanking Amino Acid:
TRRELAKMKQEPVKPEEGRD
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
78.8
33.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79
0.65
1
72.9
42.2
Minor 5ss
29.7
-2.3
4
44.1
43.8
Minor BPS
53.6
0.19
2.1
82.67
38.2

Associated Gene:

Gene:
RHOA
Ensembl Gene ID:
ENSAPLG00000014687
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015315
6727656 - 6734949
7294