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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6728950_6731932_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6728950 - 6731932
Intron Length:
2983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTATTCATTT
Flanking Amino Acid:
CFSIDSPDSLENIPEKWTPE
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
47.6
-0.1
1.9
68.76
42.8

Associated Gene:

Gene:
RHOA
Ensembl Gene ID:
ENSAPLG00000014687
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015315
6727656 - 6734949
7294