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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6767600_6768247_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6767600 - 6768247
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGCCGTGC
5'SS Class:
weak_major
3'SS Sequence:
TATTGTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CGTGTCTGAACG
Flanking Amino Acid:
LAEDPSLERHFK
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.2
43.3
41.1
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
68.8
0.42
1
62.7
43.9
Minor 5ss
36.6
-1.5
3.5
49.2
47.4
Minor BPS
52.1
-0
1.7
56.31
45

Associated Gene:

Gene:
POC1A
Ensembl Gene ID:
ENSAPLG00000007756
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044378
6767594 - 6821103
53510