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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6770508_6773105_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6770508 - 6773105
Intron Length:
2598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCCTTCTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAGTTCTAAAGT
Flanking Amino Acid:
DKTVRLWVPSVKGESTVFRA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76
0.59
0.9
72.7
32.1
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
48.6
-0
2
63.8
46.7

Associated Gene:

Gene:
POC1A
Ensembl Gene ID:
ENSAPLG00000007756
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044378
6767594 - 6821103
53510
ENSAPLT00000008061
6766540 - 6821103
54564