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Intron Name: Anas_platyrhynchos_platyrhynchos_13_6775917_6781671_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6775917 - 6781671

Intron Length:

5755

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTATCCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTTTTTCTATCC

Flanking Amino Acid:

RMNRLLQHYQVHSAVVNSLS

Intron Amino Acid Position:

226

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.3

1.12

0.8

80.2

30.6

Major BPS

73.8

0.59

1.3

72.8

Major PPT

79.2

0.66

0.7

78.3

29.3

Minor 5ss

29.2

-2.4

3.8

39.9

46.1

Minor BPS

55.7

0.16

1.9

74.26

36.7

Associated Gene:

Gene:

POC1A

Ensembl Gene ID:

ENSAPLG00000007756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008061

6766540 - 6821103

54564

ENSAPLT00000044378

6767594 - 6821103

53510