About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6863284_6865361_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6863284 - 6865361
Intron Length:
2078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCTTTCTCCATT
Flanking Amino Acid:
DDGCKAYYLKGGFNKFQTEY
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
76.3
0.59
0.8
68.1
32
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
48.5
-0
2
66.82
44.9

Associated Gene:

Gene:
DUSP7
Ensembl Gene ID:
ENSAPLG00000008525
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008854
6862872 - 6868375
5504