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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_6865791_6868067_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6865791 - 6868067
Intron Length:
2277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAGAC
U12 Branch Point Sequence:
TTCCCCTTGTCT
Flanking Amino Acid:
QFFPEAIAFIDEARSKKCGI
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.2
Major BPS
52.7
0.07
1
50.4
34.3
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
34.8
-1.7
3
42.1
39.8
Minor BPS
47.8
-0
3.5
80.75
41.3

Associated Gene:

Gene:
DUSP7
Ensembl Gene ID:
ENSAPLG00000008525
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008854
6862872 - 6868375
5504