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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_71386_72296_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71386 - 72296
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCAGTTATT
Flanking Amino Acid:
KQIYLSENPEEIAARINQSA
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.2
0.72
0.8
76.2
30.9
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
48.9
-0
2.5
81.12
40.6

Associated Gene:

Gene:
APPL1
Ensembl Gene ID:
ENSAPLG00000004500
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004671
64512 - 85564
21053