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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7162524_7163753_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7162524 - 7163753
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCGTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTTAT
U12 Branch Point Sequence:
TTCGTTTTTATA
Flanking Amino Acid:
RTHRYESLKGVDPKFLRNMR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
58.5
0.21
1.4
51.4
46
Major PPT
84.1
0.77
0.7
79.8
32.4
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
49.4
-0
1.7
61.35
39.6

Associated Gene:

Gene:
RPL29
Ensembl Gene ID:
ENSAPLG00000017190
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022083
7162141 - 7165828
3688