About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7171163_7171266_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7171163 - 7171266
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAGCC
5'SS Class:
major
3'SS Sequence:
TGTCCTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTGAGCT
Flanking Amino Acid:
ELSDLFRMFDKNADGYIDLE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
33.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.3
0.48
0.9
66.1
34.8
Minor 5ss
33.4
-1.9
3.4
43.5
37.7
Minor BPS
61
0.42
1.8
76.75
45.6

Associated Gene:

Gene:
TNNC1
Ensembl Gene ID:
ENSAPLG00000008432
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008797
7170991 - 7175755
4765