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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_7187758_7189298_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7187758 - 7189298
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATCA
Flanking Amino Acid:
AALAEELFHKGEQLLMAGEV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
51.3
0.04
1.8
68.42
38

Associated Gene:

Gene:
NISCH
Ensembl Gene ID:
ENSAPLG00000007897
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008274
7187649 - 7207177
19529